cation · a human ion-channel atlas release v1.0-354 · 10.0m cells
CATION Cell ATlas of ION channels

A single-cell atlas of the ion channelome

Every ion channel.
Every cell type.
One body.

CATION charts 354 curated ion-channel genes across 58 tissues and 738 cell types, integrated from 10.0M cells. Porecast then predicts each cell type's electrical behaviour from its channel fingerprint.

354 genes · 60 families · 738 cell types · 58 tissues · 10.0M cells

image/svg+xml human body features 2009-05-27 Sjef text : Kevin (tsaitgaist) REDON http://commons.wikimedia.org/wiki/File:Human_body_features.svg cerebral cortex pleura brain heart breast thyroid gland adrenal gland lymph node bone marrow adipose tissue skeletal muscle leukocyte frontal cortex temporal lobe prefrontal cortex pituitary gland atrial appendage aorta coronary artery gastroesophageal junction left ventricle hippocampus hippocampus caecum ileum rectum nose tongue left atrium pulmonary valve mitral valve penis vas deferens seminal vesicle testis epididymis eye nasal septum oral cavity tonsil nasal pharynx lung spinal cord amygdala trachea throat bronchus tricuspid valve diaphragm liver stomach spleen duodenum gall bladder pancreas colon small intestine appendix smooth muscle urinary bladder prostate gland nerve cerebellum cerebellar hemisphere kidney renal cortex bone cartilage esophagus salivary gland parotid gland submandibular gland skin
plate i — the human channelome, by regime
Quiescent Excitable Rhythmic
01 · genes 354 60 IUPHAR/BPS families
02 · cell types 738 54 tissues · 58 in release
03 · tissues 58 from CELLxGENE Census LTS 2025-11-08
04 · cells 10.0M 9,991,136 single cells
05 · regimes 536 / 154 / 48 quiescent · excitable · rhythmic
06 · validation R² 0.416 external donor-held-out, vs 0.342 expression ceiling
plate i — the electrical census

Every cell type has a regime.

Porecast turns each cell's ion-channel fingerprint into a Hodgkin–Huxley conductance vector and reads off a bifurcation-defined electrical regime.

of 738 cell types · external donor-held-out prediction R² 0.416 vs 0.342 expression-only ceiling.

plate ii — from fingerprint to physiology

From channel expression to an electrical regime.

Porecast — the method companion to CATION — converts a cell type's ion-channel fingerprint into a conductance vector and reads off the bifurcation-defined regime, quiescent, excitable, or rhythmic, with calibrated abstention.

plate iii — index

Explore the atlas